Institute of Plant Science and Resources

Research output

Research output per year 1992 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023

• 1194 Article
• 78 Review article
• 42 Chapter
• 21 Comment/debate
• 29 More
  • 20 Editorial
  • 4 Letter
  • 2 Conference contribution
  • 2 Short survey
  • 1 Foreword/postscript

Research output per year

Research output per year

Search results

• 2021

  Application of CRISPR/Cas9 to visualize defined genomic sequences in fixed chromosomes and nuclei

  Ishii, T., Nagaki, K. & Houben, A., Jan 1 2021, Cytogenomics. Elsevier, p. 147-153 7 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • CRISPR RNA 100%
  • Clustered Regularly Interspaced Short Palindromic Repeats 60%
  • DNA Sequence 54%
  • Chromosomes 41%
  • Fluorescence In Situ Hybridization 35%
  8 Citations (Scopus)

• Discovery of lanthanide-dependent methylotrophy and screening methods for lanthanide-dependent methylotrophs

  Tani, A., Mitsui, R. & Nakagawa, T., Jan 2021, Rare-Earth Element Biochemistry: Methanol Dehydrogenases and Lanthanide Biology. Cotruvo, J. A. (ed.). Academic Press Inc., p. 1-18 18 p. (Methods in Enzymology; vol. 650).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • alcohol dehydrogenase (acceptor) 100%
  • Lanthanoid Series Elements 86%
  • Methanol 33%
  • Bacteria 27%
  • Methylobacterium 24%
  1 Citation (Scopus)

• Site-Directed Mutagenesis in Barley Using RNA-Guided Cas Endonucleases During Microspore-Derived Generation of Doubled Haploids

  Hoffie, R. E., Otto, I., Hisano, H. & Kumlehn, J., 2021, Methods in Molecular Biology. Humana Press Inc., p. 199-214 16 p. (Methods in Molecular Biology; vol. 2287).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Hordeum 100%
  • Haploidy 89%
  • Endonucleases 84%
  • Site-Directed Mutagenesis 75%
  • CRISPR-Associated Protein 9 73%
  2 Citations (Scopus)
• 2020

  Affinity labeling and purification of plant chitin-binding LysM receptor with chitin octasaccharide derivatives

  Shinya, T., Shibuya, N. & Kaku, H., 2020, Methods in Molecular Biology. Humana Press Inc., p. 401-412 12 p. (Methods in Molecular Biology; vol. 2132).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Chitin 100%
  • N-acetylchitooctaose 92%
  • Oryza 44%
  • N-Acetylmuramoyl-L-alanine Amidase 28%
  • Chitinases 26%

• Dianthovirus (Tombusviridae)

  Hyodo, K. & Kaido, M., Jan 1 2020, Encyclopedia of Virology: Volume 1-5, Fourth Edition. Elsevier, Vol. 1-5. p. 383-387 5 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Tombusviridae 100%
  • RNA 18%
  • Genome 18%
  • Product Packaging 15%
  • Virion 12%

• Hijacking of host cellular components as proviral factors by plant-infecting viruses

  Hyodo, K. & Okuno, T., 2020, (Accepted/In press) Advances in Virus Research. Academic Press Inc., (Advances in Virus Research).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Plant Viruses 100%
  • Virus Diseases 36%
  • Viral Proteins 35%
  • Protein Array Analysis 20%
  • Viral Genome 18%
  20 Citations (Scopus)

• Structure and assembly of double-stranded RNA mycoviruses

  Mata, C. P., Rodríguez, J. M., Suzuki, N. & Castón, J. R., Jan 2020, Virus Assembly and Exit Pathways. Kielian, M., Mettenleiter, T. C. & Roossinck, M. J. (eds.). Academic Press Inc., p. 213-247 35 p. (Advances in Virus Research; vol. 108).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Fungal Viruses 100%
  • Double-Stranded RNA 66%
  • Capsid Proteins 63%
  • Capsid 45%
  • Penicillium chrysogenum virus 35%
  5 Citations (Scopus)
• 2018

  Development of rice breeding and cultivation technology tailored for Kenya's environment

  Makihara, D., Kimani, J., Samejima, H., Kikuta, M., Menge, D., Doi, K., Inukai, Y., Maekawa, M., Masunaga, T., Sasaki, Y., Katsura, K., Kitano, H., Mitsuya, S., Kano-Nakata, M., Wainaina, C., Gichuhi, E., Njinju, S., Kagito, S., Magoti, R., Kundu, C., & 1 othersYamauchi, A., Aug 1 2018, Crop Production under Stressful Conditions: Application of Cutting-edge Science and Technology in Developing Countries. Springer Singapore, p. 27-47 21 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter
  4 Citations (Scopus)

• Dichorhaviruses in their Host Plants and Mite Vectors

  Dietzgen, R. G., Freitas-Astúa, J., Chabi-Jesus, C., Ramos-González, P. L., Goodin, M. M., Kondo, H., Tassi, A. D. & Kitajima, E. W., Jan 1 2018, Advances in Virus Research. Palukaitis, P. & Roossinck, M. J. (eds.). Academic Press Inc., p. 119-148 30 p. (Advances in Virus Research; vol. 102).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Mites 100%
  • Viruses 53%
  • Flecks 21%
  • Rhabdoviridae 20%
  • Citrus 17%
  29 Citations (Scopus)

• Environmental toxicity and evaluation

  Heng, L. Y., Ooi, L., Mori, I. C. & Futra, D., May 7 2018, Environmental Risk Analysis for Asian-Oriented, Risk-Based Watershed Management: Japan and Malaysia. Springer Singapore, p. 71-94 24 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Biosensing Techniques 100%
  • Toxicity 96%
  • Ecosystem 90%
  • Biological Assay 85%
  • toxicity 60%
  4 Citations (Scopus)

• Transport system of mineral elements in rice

  Mitani-Ueno, N., Yamaji, N. & Ma, J. F., Mar 15 2018, Rice Genomics, Genetics and Breeding. Springer Singapore, p. 223-240 18 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Mineral Element 100%
  • Oryza 76%
  • Minerals 64%
  • transporters 55%
  • Soil 54%
  14 Citations (Scopus)

• Viruses of Plant-Interacting Fungi

  Hillman, B. I., Annisa, A. & Suzuki, N., Jan 1 2018, Advances in Virus Research. Kielian, M., Mettenleiter, T. C. & Roossinck, M. J. (eds.). Academic Press Inc., p. 99-116 18 p. (Advances in Virus Research; vol. 100).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Plant Viruses 100%
  • Fungi 59%
  • Coinfection 32%
  • Viruses 29%
  • RNA Viruses 25%
  70 Citations (Scopus)
• 2016

  Chromatin immunoprecipitation for detecting epigenetic marks on plant nucleosomes

  Nagaki, K., 2016, Methods in Molecular Biology. Humana Press Inc., Vol. 1469. p. 197-206 10 p. (Methods in Molecular Biology; vol. 1469).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Nucleosomes 100%
  • Chromatin Immunoprecipitation 95%
  • Histones 79%
  • Epigenomics 74%
  • Centromere 34%
  1 Citation (Scopus)

• Genetic diversity of beet necrotic yellow vein virus

  Tamada, T., Kondo, H. & Chiba, S., Jan 1 2016, Rhizomania. Springer International Publishing, p. 109-131 23 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Beet necrotic yellow vein virus 100%
  • Benyvirus 67%
  • Genetic Variation 46%
  • Beta vulgaris 39%
  • genetic variation 30%
  4 Citations (Scopus)

• Oligosaccharin receptors in plant immunity

  Shinya, T., Desaki, Y. & Shibuya, N., Jan 1 2016, Research Progress in Oligosaccharins. Springer New York, p. 29-39 11 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Plant Immunity 100%
  • Oligosaccharide 52%
  • immunity 49%
  • elicitors 48%
  • Oligosaccharides 47%

• Regulation of stomatal responses to abiotic and biotic stresses by redox state

  Murata, Y., Munemasa, S. & Mori, I. C., Jan 1 2016, Redox State as a Central Regulator of Plant-Cell Stress Responses. Springer International Publishing, p. 331-347 17 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Physiological Stress 100%
  • guard cells 98%
  • Redox State 96%
  • Signal Transduction 90%
  • biotic stress 83%
• 2015

  Morphological variations of starch grains

  Matsushima, R., Jan 1 2015, Starch: Metabolism and Structure. Springer Japan, p. 425-441 17 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Starch 100%
  • starch granules 84%
  • Poaceae 15%
  • phylogeny 12%
  • Endosperm 10%
  9 Citations (Scopus)

• The role of DNA methylation in transposable element silencing and genomic imprinting

  Ikeda, Y. & Nishimura, T., Jan 1 2015, Nuclear Functions in Plant Transcription, Signaling and Development. Springer New York, p. 13-29 17 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Genomic Imprinting 100%
  • DNA Transposable Elements 92%
  • genomic imprinting 88%
  • DNA methylation 76%
  • DNA Methylation 70%
  20 Citations (Scopus)
• 2014

  Beer and wort proteomics

  Iimure, T., Kihara, M. & Sato, K., 2014, Plant Proteomics: Methods and Protocols. Humana Press Inc., p. 737-754 18 p. (Methods in Molecular Biology; vol. 1072).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Proteomics 100%
  • Proteome 80%
  • Proteins 34%
  • Digestion 28%
  • Mass Spectrometry 27%
  3 Citations (Scopus)

• Genetic diversity and germplasm management: Wild barley, landraces, breeding materials

  Sato, K., Flavell, A., Russell, J., Börner, A. & Valkoun, J., 2014, Biotechnology in Agriculture and Forestry. Springer International Publishing, p. 21-36 16 p. (Biotechnology in Agriculture and Forestry; vol. 69).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • germplasm 100%
  • Hordeum 95%
  • barley 78%
  • Breeding 78%
  • genetic diversity 74%
  6 Citations (Scopus)

• Plastid proteases

  Adam, Z. & Sakamoto, W., Jan 1 2014, Plastid Biology. Springer New York, p. 359-389 31 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Plastids 100%
  • plastids 61%
  • Chloroplasts 60%
  • Peptide Hydrolases 54%
  • proteinases 48%
  2 Citations (Scopus)

• Stomatal regulation of plant water status

  Murata, Y. & Mori, I. C., Jan 28 2014, Plant Abiotic Stress, Second Edition. Wiley Blackwell, p. 47-67 21 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Water 100%
  • stomata 64%
  • water 61%
  • transpiration 39%
  • Cactaceae 30%
  8 Citations (Scopus)
• 2013

  A novel link between chloroplast development and stress response lessoned by leaf-variegated mutant

  Sakamoto, W., Miura, E. & Kato, Y., 2013, Advanced Topics in Science and Technology in China. Springer Science and Business Media Deutschland GmbH, p. 669-673 5 p. (Advanced Topics in Science and Technology in China).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Superoxide Dismutase 100%
  • Reactive oxygen species 91%
  • White 57%
  • Copper 55%
  • Genes 49%

• Hypovirus Cysteine Proteases p29 and p48

  Suzuki, N., Aug 29 2013, Handbook of Proteolytic Enzymes. Elsevier Ltd, Vol. 2. p. 2192-2195 4 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

• The lattice-like structure observed by Vipp1-GFP in arabidopsis chloroplasts

  Zhang, L., Kato, Y., Saigo, K., Vothknecht, U. C. & Sakamoto, W., 2013, Advanced Topics in Science and Technology in China. Springer Science and Business Media Deutschland GmbH, p. 394-397 4 p. (Advanced Topics in Science and Technology in China).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Proteins 100%
  • Protein 45%
  • Bacteriophages 31%
  • Bacterial Proteins 18%
  • Cyanobacteria 16%

• Transient gene expression in epidermal cells of plant leaves by biolistic DNA delivery

  Ueki, S., Magori, S., Lacroix, B. & Citovsky, V., 2013, Biolistic DNA Delivery: Methods and Protocols. Sudowe, S. & Reske-Kunz, A. (eds.). p. 17-26 10 p. (Methods in Molecular Biology; vol. 940).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Biolistics 100%
  • Plant Leaves 88%
  • Epidermal Cells 68%
  • Agrobacterium 36%
  • Gene Expression 35%
  19 Citations (Scopus)

• Viruses of the White Root Rot Fungus, Rosellinia necatrix

  Kondo, H., Kanematsu, S. & Suzuki, N., 2013, Advances in Virus Research. Academic Press Inc., p. 177-214 38 p. (Advances in Virus Research; vol. 86).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Fungi 100%
  • Viruses 74%
  • Biological Control Agents 18%
  • Ascomycota 16%
  • Double-Stranded RNA 13%
  69 Citations (Scopus)
• 2012

  Beneficial Elements

  Broadley, M., Brown, P., Cakmak, I., Ma, J. F., Rengel, Z. & Zhao, F., Dec 1 2012, Marschner's Mineral Nutrition of Higher Plants. Elsevier Ltd, p. 249-269 21 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter
  101 Citations (Scopus)

• Cloning genes for mineral Uptake: Examples using rice mutants

  Ma, J. F., Oct 24 2012, Plant Mutation Breeding and Biotechnology. CABI Publishing, p. 463-470 8 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter
• 2010

  Genome analysis: The state of knowledge of barley genes

  Druka, A., Sato, K. & Muehlbauer, G. J., Jan 1 2010, Barley: Production, Improvement, and Uses. wiley, p. 85-111 27 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Hordeum 100%
  • Genomics 73%
  • Genes 67%
  • barley 55%
  • structural genomics 50%
  6 Citations (Scopus)

• Silicon transporters in higher plants

  Ma, J. F., Dec 1 2010, MIPs and Their Role in the Exchange of Metalloids. Jahn, T. & Bienert, G. (eds.). p. 99-109 11 p. (Advances in Experimental Medicine and Biology; vol. 679).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Silicic Acid 100%
  • Silicon 96%
  • Plant Growth 54%
  • Nutrient 42%
  • Oryza 35%
  63 Citations (Scopus)
• 2008

  Fungal Viruses

  Ghabrial, S. A. & Suzuki, N., Jan 1 2008, Encyclopedia of Virology. Elsevier Ltd, p. 284-291 8 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Fungal Viruses 100%
  • Genome 24%
  • Double-Stranded RNA 22%
  • Host Specificity 15%
  • RNA 12%
  15 Citations (Scopus)

• Uptake of Silicon in Different Plant Species

  Ma, J. F., Mar 20 2008, Handbook of Biomineralization: Biological Aspects and Structure Formation. Wiley-VCH Verlag GmbH & Co. KGaA, Vol. 1. p. 113-124 12 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Silicon 100%
  • Nutrient 88%
  • Soil 69%
  • Xylem 13%
  • Droughts 11%
  1 Citation (Scopus)
• 2007

  Strategies of Plants to Adapt to Mineral Stresses in Problem Soils

  Hiradate, S., Ma, J. F. & Matsumoto, H., 2007, Advances in Agronomy. Sparks, D. (ed.). p. 65-132 68 p. (Advances in Agronomy; vol. 96).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • minerals 100%
  • mineral 73%
  • soil 67%
  • phytosiderophores 66%
  • agricultural ecosystem 51%
  43 Citations (Scopus)

• Syndrome of Aluminum Toxicity and Diversity of Aluminum Resistance in Higher Plants

  Ma, J. F., 2007, A Survey of Cell Biology. Jeon, K. (ed.). p. 225-252 28 p. (International Review of Cytology; vol. 264).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Aluminum 100%
  • Acids 19%
  • Anions 18%
  • Rhizosphere 13%
  • ATP-Binding Cassette Transporters 10%
  304 Citations (Scopus)
• 2004

  Viruses of the Chestnut Blight Fungus, Cryphonectria parasitica

  Hillman, B. I. & Suzuki, N., 2004, Advances in Virus Research. Academic Press Inc., p. 423-472 50 p. (Advances in Virus Research; vol. 63).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter
  108 Citations (Scopus)
• 2003

  Chapter 10 Genetic diversity for quantitatively inherited agronomic and malting quality traits

  Hayes, P. M., Castro, A., Marquez-Cedillo, L., Corey, A., Henson, C., Jones, B. L., Kling, J., Mather, D., Matus, I., Rossi, C. & Sato, K., 2003, Developments in Plant Genetics and Breeding. C ed. Elsevier, p. 201-226 26 p. (Developments in Plant Genetics and Breeding; vol. 7, no. C).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter
  41 Citations (Scopus)

• Chapter 14 Barley diversity-an outlook

  Sato, K., von Bothmer, R., van Hintum, T. & Knüpffer, H., 2003, Developments in Plant Genetics and Breeding. C ed. Elsevier, p. 269-278 10 p. (Developments in Plant Genetics and Breeding; vol. 7, no. C).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter
  2 Citations (Scopus)

• Chapter 1 Barley diversity-an introduction

  Bothmer, R. V., Sato, K., Knüpffer, H. & Hintum, T. V., 2003, Developments in Plant Genetics and Breeding. C ed. Elsevier, p. 3-8 6 p. (Developments in Plant Genetics and Breeding; vol. 7, no. C).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter
  12 Citations (Scopus)

• Chapter 2 The domestication of cultivated barley

  Bothmer, R. V., Sato, K., Komatsuda, T., Yasuda, S. & Fischbeck, G., 2003, Developments in Plant Genetics and Breeding. C ed. Elsevier, p. 9-27 19 p. (Developments in Plant Genetics and Breeding; vol. 7, no. C).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter
  59 Citations (Scopus)

• Chapter 4 Ecogeographical diversity-a Vavilovian appraoch

  Knüpffer, H., Terentyeva, I., Hammer, K., Kovaleva, O. & Sato, K., 2003, Developments in Plant Genetics and Breeding. C ed. Elsevier, p. 53-76 24 p. (Developments in Plant Genetics and Breeding; vol. 7, no. C).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter
  19 Citations (Scopus)

• Chapter 8 Diversity in resistance to biotic stresses

  Weibull, J., Walther, U., Sato, K., Habekuß, A., Kopahnke, D. & Proeseler, G., 2003, Developments in Plant Genetics and Breeding. C ed. Elsevier, p. 143-178 36 p. (Developments in Plant Genetics and Breeding; vol. 7, no. C).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter
  13 Citations (Scopus)