Research Institute for Interdisciplinary Science

2023

Actin-rich lamellipodia-like protrusions contribute to the integrity of epithelial cell–cell junctions

Senju, Y., Mushtaq, T., Vihinen, H., Manninen, A., Saarikangas, J., Ven, K., Engel, U., Varjosalo, M., Jokitalo, E. & Lappalainen, P., May 2023, In: Journal of Biological Chemistry. 299, 5, 104571.

Research output: Contribution to journal › Article › peer-review

Open Access

Approximations for adapted M-solutions of type-II backward stochastic Volterra integral equations

Hamaguchi, Y. & Taguchi, D., 2023, In: ESAIM - Probability and Statistics. 27, p. 19-79 61 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Biochemical and spectroscopic characterization of PSI-LHCI from the red alga Cyanidium caldarium

Nagao, R., Ueno, Y., Furutani, M., Kato, K., Shen, J-R. & Akimoto, S., 2023, (Accepted/In press) In: Photosynthesis research.

Research output: Contribution to journal › Article › peer-review

Carboazidation of Terminal Alkenes with Trimethylsilyl Azide and Cyclic Ethers Catalyzed by Copper Powder under Oxidative Conditions

Ikemoto, Y., Chiba, S., Li, Z., Chen, Q., Mori, H. & Nishihara, Y., Apr 7 2023, In: Journal of Organic Chemistry. 88, 7, p. 4472-4480 9 p.

Research output: Contribution to journal › Article › peer-review

Characterization of the Rate-Limiting Steps in the Dark-To-Light Transitions of Closed Photosystem II: Temperature Dependence and Invariance of Waiting Times during Multiple Light Reactions

Magyar, M., Sipka, G., Han, W., Li, X., Han, G., Shen, J. R., Lambrev, P. H. & Garab, G., Jan 2023, In: International journal of molecular sciences. 24, 1, 94.

Research output: Contribution to journal › Article › peer-review

Open Access

Controlling of Localization by Elemental-substitution Effect in Layered BiCh₂-based Compounds LaO_1-xF_xBiS_2-ySe_y

Hoshi, K., Arima, H., Kataoka, N., Ochi, M., Yamashita, A., de Visser, A., Yokoya, T., Kuroki, K. & Mizuguchi, Y., May 15 2023, In: journal of the physical society of japan. 92, 5, 054704.

Research output: Contribution to journal › Article › peer-review

Cryo-electron microscopy structure of the intact photosynthetic light-harvesting antenna-reaction center complex from a green sulfur bacterium

Chen, J. H., Wang, W., Wang, C., Kuang, T., Shen, J. R. & Zhang, X., Jan 2023, In: Journal of Integrative Plant Biology. 65, 1, p. 223-234 12 p.

Research output: Contribution to journal › Article › peer-review

2 Citations (Scopus)

High-sensitive XANES analysis at Ce L₂-edge for Ce in bauxites using transition-edge sensors: Implications for Ti-rich geological samples

Li, W., Yamada, S., Hashimoto, T., Okumura, T., Hayakawa, R., Nitta, K., Sekizawa, O., Suga, H., Uruga, T., Ichinohe, Y., Sato, T., Toyama, Y., Noda, H., Isobe, T., Takatori, S., Hiraki, T., Tatsuno, H., Kominato, N., Ito, M., Sakai, Y., & 7 othersOmamiuda, H., Yamaguchi, A., Yomogida, T., Miura, H., Nagasawa, M., Okada, S. & Takahashi, Y., Feb 1 2023, In: Analytica Chimica Acta. 1240, 340755.

Research output: Contribution to journal › Article › peer-review

High-sensitivity low-noise photodetector using a large-area silicon photomultiplier

Masuda, T., Hiramoto, A., Ang, D. G., Meisenhelder, C., Panda, C. D., Sasao, N., Uetake, S., Wu, X., Demille, D. P., Doyle, J. M., Gabrielse, G. & Yoshimura, K., Jan 16 2023, In: Optics Express. 31, 2, p. 1943-1957 15 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Increased localization of Majorana modes in antiferromagnetic chains on superconductors

Crawford, D., Mascot, E., Shimizu, M., Wiesendanger, R., Morr, D. K., Jeschke, H. O. & Rachel, S., Feb 15 2023, In: Physical Review B. 107, 7, 075410.

Research output: Contribution to journal › Article › peer-review

Isolation and characterization of trimeric and monomeric PSI cores from Acaryochloris marina MBIC11017

Nagao, R., Ogawa, H., Tsuboshita, N., Kato, K., Toyofuku, R., Tomo, T. & Shen, J-R., 2023, (Accepted/In press) In: Photosynthesis research.

Research output: Contribution to journal › Article › peer-review

Liquid Structures and Ion Dynamics of Ionic Liquids viewed from Intermolecular Interactions

Tsuzuki, S. & Shinoda, W., 2023, (Accepted/In press) In: Chemical Record.

Research output: Contribution to journal › Article › peer-review

Magnetic ground state dependent magnetostriction effects on the chiral magnet CrNb₃ S₆

Mito, M., Tajiri, T., Kousaka, Y., Akimitsu, J., Kishine, J. I. & Inoue, K., Feb 1 2023, In: Physical Review B. 107, 5, 054427.

Research output: Contribution to journal › Article › peer-review

Moesin-ezrin-radixin-like protein merlin: Its conserved and distinct functions from those of ERM proteins

Senju, Y. & Hibino, E., Feb 2023, In: Biochimica et Biophysica Acta - Biomembranes. 1865, 2, 184076.

Research output: Contribution to journal › Article › peer-review

Multiple-site Ag doping in Bi₂Se₃: Compositional crossover from substitution to intercalation as revealed by photoelectron diffraction and X-ray fluorescence holography

Matsui, F., Ota, H., Eguchi, R., Goto, H., Kobayashi, K., Akimitsu, J., Ozaki, H., Nishioka, T., Kimura, K., Hayashi, K., Shimano, T., Happo, N. & Kubozono, Y., Apr 2023, In: Journal of Electron Spectroscopy and Related Phenomena. 264, 147295.

Research output: Contribution to journal › Article › peer-review

Mutation detection of urinary cell-free DNA via catch-and-release isolation on nanowires for liquid biopsy

Takahashi, H., Yasui, T., Hirano, M., Shinjo, K., Miyazaki, Y., Shinoda, W., Hasegawa, T., Natsume, A., Kitano, Y., Ida, M., Zhang, M., Shimada, T., Paisrisarn, P., Zhu, Z., Ohka, F., Aoki, K., Rahong, S., Nagashima, K., Yanagida, T. & Baba, Y., Aug 15 2023, In: Biosensors and Bioelectronics. 234, 115318.

Research output: Contribution to journal › Article › peer-review

Open Access

Photoelectron Holography Study of La(O,F)BiS₂

Li, Y. J., Sun, Z. X., Kataoka, N., Setoguchi, T., Hashimoto, Y., Takeuchi, S., Koga, S., Demura, S., Noguchi, K., Sakata, H., Mizuguchi, Y., Matsushita, T., Wakita, T., Muraoka, Y. & Yokoya, T., Apr 15 2023, In: journal of the physical society of japan. 92, 4, 044801.

Research output: Contribution to journal › Article › peer-review

Photoinduced chlorophyll charge transfer state identified in the light-harvesting complex II from a marine green alga Bryopsis corticulans

Li, D. H., Wang, W., Zhou, C., Zhang, Y., Zhao, S., Zhou, Y. M., Gao, R. Y., Yao, H. D., Fu, L. M., Wang, P., Shen, J. R., Kuang, T. & Zhang, J. P., Jan 20 2023, In: iScience. 26, 1, 105761.

Research output: Contribution to journal › Article › peer-review

Open Access

Pressure Dependence of Superconductivity in a Charge-Density-Wave Superconductor Bi₂Rh₃Se₂

Ikeda, M., Zhang, Z., Goto, H., Eguchi, R., Liao, Y. F., Ishii, H. & Kubozono, Y., 2023, (Accepted/In press) In: Inorganic Chemistry.

Research output: Contribution to journal › Article › peer-review

Regulation of actin-binding proteins by PI(4,5)P₂

Senju, Y., Feb 10 2023, In: Biophysical Journal. 122, 3S1, p. 230a

Research output: Contribution to journal › Article › peer-review

Self-Assembly of Glycerol-Amphiphilic Janus Dendrimers Amplifies and Indicates Principles for the Selection of Stereochemistry by Biological Membranes

Zhang, D., Xiao, Q., Rahimzadeh, M., Liu, M., Rodriguez-Emmenegger, C., Miyazaki, Y., Shinoda, W. & Percec, V., 2023, (Accepted/In press) In: Journal of the American Chemical Society.

Research output: Contribution to journal › Article › peer-review

Self-organized vertical multilayer structures in spinodally decomposed TiO₂-VO₂ films on glass substrates

Muraoka, Y., Takeda, K., Takemoto, Y., Wakita, T. & Yokoya, T., Mar 31 2023, In: Thin Solid Films. 769, 139749.

Research output: Contribution to journal › Article › peer-review

Semiconductor–metal transition in Bi₂Se₃ caused by impurity doping

Uchiyama, T., Goto, H., Uesugi, E., Takai, A., Zhi, L., Miura, A., Hamao, S., Eguchi, R., Ota, H., Sugimoto, K., Fujiwara, A., Matsui, F., Kimura, K., Hayashi, K., Ueno, T., Kobayashi, K., Akimitsu, J. & Kubozono, Y., Dec 2023, In: Scientific reports. 13, 1, 537.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Citation (Scopus)

Semi-implicit Euler–Maruyama scheme for polynomial diffusions on the unit ball

Nakagawa, T., Taguchi, D. & Yuasa, T., Mar 15 2023, In: Journal of Mathematical Analysis and Applications. 519, 2, 126829.

Research output: Contribution to journal › Article › peer-review

SiPM module for the ACME III electron EDM search

Hiramoto, A., Masuda, T., Ang, D. G., Meisenhelder, C., Panda, C., Sasao, N., Uetake, S., Wu, X., Demille, D., Doyle, J. M., Gabrielse, G. & Yoshimura, K., Jan 1 2023, In: Nuclear Instruments and Methods in Physics Research, Section A: Accelerators, Spectrometers, Detectors and Associated Equipment. 1045, 167513.

Research output: Contribution to journal › Article › peer-review

1 Citation (Scopus)

sparse-ir: Optimal compression and sparse sampling of many-body propagators

Wallerberger, M., Badr, S., Hoshino, S., Huber, S., Kakizawa, F., Koretsune, T., Nagai, Y., Nogaki, K., Nomoto, T., Mori, H., Otsuki, J., Ozaki, S., Plaikner, T., Sakurai, R., Vogel, C., Witt, N., Yoshimi, K. & Shinaoka, H., Feb 2023, In: SoftwareX. 21, 101266.

Research output: Contribution to journal › Article › peer-review

Open Access

4 Citations (Scopus)

Structural comparison of geometrical isomers of N'-(1H-imidazol-4-ylmethylene)picolinohydrazide and their mononuclear and dinuclear cobalt(III) complexes

Acheampong, D. K. B., Sunatsuki, Y. & Suzuki, T., Jan 2023, In: Results in Chemistry. 5, 100798.

Research output: Contribution to journal › Article › peer-review

Open Access

Structure of a monomeric photosystem I core associated with iron-stress-induced-A proteins from Anabaena sp. PCC 7120

Nagao, R., Kato, K., Hamaguchi, T., Ueno, Y., Tsuboshita, N., Shimizu, S., Furutani, M., Ehira, S., Nakajima, Y., Kawakami, K., Suzuki, T., Dohmae, N., Akimoto, S., Yonekura, K. & Shen, J-R., Dec 2023, In: Nature communications. 14, 1, 920.

Research output: Contribution to journal › Article › peer-review

Open Access

Temperature dependent local inhomogeneity and magnetic moments of (Li_1−xFe_x)OHFeSe superconductors

Tomassucci, G., Tortora, L., Pugliese, G. M., Stramaglia, F., Simonelli, L., Marini, C., Terashima, K., Wakita, T., Ayukawa, S., Yokoya, T., Kudo, K., Nohara, M., Mizokawa, T. & Saini, N. L., 2023, (Accepted/In press) In: Physical Chemistry Chemical Physics.

Research output: Contribution to journal › Article › peer-review

Triplet Delocalization over the Reaction Center Chlorophylls in Photosystem II

Hayase, T., Shimada, Y., Mitomi, T., Nagao, R. & Noguchi, T., 2023, (Accepted/In press) In: Journal of Physical Chemistry B.

Research output: Contribution to journal › Article › peer-review

2022

Activated I-BAR IRSp53 clustering controls the formation of VASP-actin-based membrane protrusions

Tsai, F. C., Henderson, J. M., Jarin, Z., Kremneva, E., Senju, Y., Pernier, J., Mikhajlov, O., Manzi, J., Kogan, K., Le Clainche, C., Voth, G. A., Lappalainen, P. & Bassereau, P., Oct 14 2022, In: Science Advances. 8, 41, p. eabp8677

Research output: Contribution to journal › Article › peer-review

4 Citations (Scopus)

Adsorption characteristics of peptides on ω-functionalized self-assembled monolayers: a molecular dynamics study

Yadav, H. O. S., Kuo, A. T., Urata, S., Funahashi, K., Imamura, Y. & Shinoda, W., May 27 2022, In: Physical Chemistry Chemical Physics. 24, 24, p. 14805-14815 11 p.

Research output: Contribution to journal › Article › peer-review

1 Citation (Scopus)

Algal photosystem I dimer and high-resolution model of PSI-plastocyanin complex

Naschberger, A., Mosebach, L., Tobiasson, V., Kuhlgert, S., Scholz, M., Perez-Boerema, A., Ho, T. T. H., Vidal-Meireles, A., Takahashi, Y., Hippler, M. & Amunts, A., Oct 2022, In: Nature Plants. 8, 10, p. 1191-1201 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

7 Citations (Scopus)

Amphotericin B assembles into seven-molecule ion channels: An NMR and molecular dynamics study

Umegawa, Y., Yamamoto, T., Dixit, M., Funahashi, K., Seo, S., Nakagawa, Y., Suzuki, T., Matsuoka, S., Tsuchikawa, H., Hanashima, S., Oishi, T., Matsumori, N., Shinoda, W. & Murata, M., Jun 2022, In: Science Advances. 8, 24, eabo2658.

Research output: Contribution to journal › Article › peer-review

8 Citations (Scopus)

An emergence of chiral helimagnetism or ferromagnetism governed by Cr intercalation in a dichalcogenide CrNb₃S₆

Kousaka, Y., Ogura, T., Jiang, J., Mizutani, K., Iwasaki, S., Akimitsu, J. & Togawa, Y., Sept 1 2022, In: APL Materials. 10, 9, 090704.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Citation (Scopus)

Anomalously large spin-dependent electron correlation in the nearly half-metallic ferromagnet CoS2

Fujiwara, H., Terashima, K., Otsuki, J., Takemori, N., Jeschke, H. O., Wakita, T., Yano, Y., Hosoda, W., Kataoka, N., Teruya, A., Kakihana, M., Hedo, M., Nakama, T., Ōnuki, Y., Yaji, K., Harasawa, A., Kuroda, K., Shin, S., Horiba, K., Kumigashira, H., & 2 othersMuraoka, Y. & Yokoya, T., Aug 15 2022, In: Physical Review B. 106, 8, 085114.

Research output: Contribution to journal › Article › peer-review

Antiferromagnetic spin Seebeck effect across the spin-flop transition: A stochastic Ginzburg-Landau simulation

Yamamoto, Y., Ichioka, M. & Adachi, H., Mar 1 2022, In: Physical Review B. 105, 10, 104417.

Research output: Contribution to journal › Article › peer-review

6 Citations (Scopus)

A Possible Mechanism for Aggregation-Induced Chlorophyll Fluorescence Quenching in Light-Harvesting Complex II from the Marine Green Alga Bryopsis corticulans

Yao, H. D., Li, D. H., Gao, R. Y., Zhou, C., Wang, W., Wang, P., Shen, J. R., Kuang, T. & Zhang, J. P., Nov 24 2022, In: Journal of Physical Chemistry B. 126, 46, p. 9580-9590 11 p.

Research output: Contribution to journal › Article › peer-review

Architecture of the chloroplast PSI–NDH supercomplex in Hordeum vulgare

Shen, L., Tang, K., Wang, W., Wang, C., Wu, H., Mao, Z., An, S., Chang, S., Kuang, T., Shen, J. R., Han, G. & Zhang, X., Jan 27 2022, In: Nature. 601, 7894, p. 649-654 6 p.

Research output: Contribution to journal › Article › peer-review

18 Citations (Scopus)

Assembly Apparatus of Light-Harvesting Complexes: Identification of Alb3.1-cpSRP-LHCP Complexes in the Green Alga Chlamydomonas reinhardtii

Rathod, M. K., Sreedhar, N., Ozawa, S. I., Kuroda, H., Kodama, N., Bujaldon, S., Wollman, F. A. & Takahashi, Y., Jan 1 2022, In: Plant and Cell Physiology. 63, 1, p. 70-81 12 p.

Research output: Contribution to journal › Article › peer-review

1 Citation (Scopus)

Axion cosmology in the presence of nontrivial Nambu-Goldstone modes

Yoshimura, M., May 15 2022, In: Physical Review D. 105, 10, 103522.

Research output: Contribution to journal › Article › peer-review

Open Access

Bex1 is essential for ciliogenesis and harbours biomolecular condensate-forming capacity

Hibino, E., Ichiyama, Y., Tsukamura, A., Senju, Y., Morimune, T., Ohji, M., Maruo, Y., Nishimura, M. & Mori, M., Dec 2022, In: BMC Biology. 20, 1, 42.

Research output: Contribution to journal › Article › peer-review

Open Access

3 Citations (Scopus)

Bifurcated symmetry breaking in scalar-tensor gravity

Yoshimura, M., Apr 15 2022, In: Physical Review D. 105, 8, 083522.

Research output: Contribution to journal › Article › peer-review

2 Citations (Scopus)

Birchite Cd2Cu2(PO4)2SO4·5 H2 O as a model antiferromagnetic spin-1/2 Heisenberg J1-J2 chain

Fujihala, M., Jeschke, H. O., Morita, K., Kuwai, T., Koda, A., Okabe, H., Matsuo, A., Kindo, K. & Mitsuda, S., Nov 2022, In: Physical Review Materials. 6, 11, 114408.

Research output: Contribution to journal › Article › peer-review

Characterization of photosystem II assembly complexes containing ONE-HELIX PROTEIN1 in Arabidopsis thaliana

Maeda, H., Takahashi, K., Ueno, Y., Sakata, K., Yokoyama, A., Yarimizu, K., Myouga, F., Shinozaki, K., Ozawa, S. I., Takahashi, Y., Tanaka, A., Ito, H., Akimoto, S., Takabayashi, A. & Tanaka, R., Mar 2022, In: Journal of Plant Research. 135, 2, p. 361-376 16 p.

Research output: Contribution to journal › Article › peer-review

1 Citation (Scopus)

Charge-neutral fermions and magnetic field-driven instability in insulating YbIr₃Si₇

Sato, Y., Suetsugu, S., Tominaga, T., Kasahara, Y., Kasahara, S., Kobayashi, T., Kitagawa, S., Ishida, K., Peters, R., Shibauchi, T., Nevidomskyy, A. H., Qian, L., Morosan, E. & Matsuda, Y., Dec 2022, In: Nature communications. 13, 1, 394.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Citation (Scopus)

Charge-Ordering and Structural Transition in the New Organic Conductor δ′-(BEDT-TTF)₂CF₃CF₂SO₃

Olejniczak, I., Barszcz, B., Auban-Senzier, P., Jeschke, H. O., Wojciechowski, R. & Schlueter, J. A., Feb 3 2022, In: Journal of Physical Chemistry C. 126, 4, p. 1890-1900 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Charge Transport Capabilities of Dibenzo[ n]phenacenes (n = 5-7): Influence of Trap States and Molecular Packing

Zhang, Y., Hamao, S., Goto, H., Kubozono, Y., Okamoto, H., Sugimoto, K., Yasuda, N., Fujiwara, A. & Eguchi, R., Nov 10 2022, In: Journal of Physical Chemistry C. 126, 44, p. 18849-18854 6 p.

Research output: Contribution to journal › Article › peer-review

Chirality-controlled enantiopure crystal growth of a transition metal monosilicide by a floating zone method

Kousaka, Y., Iwasaki, S., Sayo, T., Tanida, H., Matsumura, T., Araki, S., Akimitsu, J. & Togawa, Y., Apr 2022, In: Japanese journal of applied physics. 61, 4, 045501.

Research output: Contribution to journal › Article › peer-review

3 Citations (Scopus)

Cooperative antimicrobial action of melittin on lipid membranes: A coarse-grained molecular dynamics study

Miyazaki, Y. & Shinoda, W., Sept 1 2022, In: Biochimica et Biophysica Acta - Biomembranes. 1864, 9, 183955.

Research output: Contribution to journal › Article › peer-review

2 Citations (Scopus)

Research Institute for Interdisciplinary Science

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