TY - JOUR
T1 - Computer simulation studies of self-assembling macromolecules
AU - Shinoda, Wataru
AU - DeVane, Russell
AU - Klein, Michael L.
N1 - Funding Information:
We thank Sharon Loverde for useful discussion. This research was partly supported by NSF , CREST-JST , KAKENHI (No. 11004604 ), Strategic Programs for Innovative Research (SPIRE) , MEXT , and the Computational Materials Science Initiative (CMSI), Japan .
PY - 2012/4
Y1 - 2012/4
N2 - Coarse-grained (CG) molecular models are now widely used to understand the structure and functionality of macromolecular self-assembling systems. In the last few years, significant efforts have been devoted to construct quantitative CG models based on data from molecular dynamics (MD) simulations with more detailed all-atom (AA) intermolecular force fields as well as experimental thermodynamic data. We review some of the recent progress pertaining to the MD simulation of self-assembling macromolecular systems, using as illustrations the application of CG models to probe surfactant and lipid self-assembly including liposome and dendrimersome formation as well as the interaction of biomembranes with nanoparticles.
AB - Coarse-grained (CG) molecular models are now widely used to understand the structure and functionality of macromolecular self-assembling systems. In the last few years, significant efforts have been devoted to construct quantitative CG models based on data from molecular dynamics (MD) simulations with more detailed all-atom (AA) intermolecular force fields as well as experimental thermodynamic data. We review some of the recent progress pertaining to the MD simulation of self-assembling macromolecular systems, using as illustrations the application of CG models to probe surfactant and lipid self-assembly including liposome and dendrimersome formation as well as the interaction of biomembranes with nanoparticles.
UR - http://www.scopus.com/inward/record.url?scp=84861784814&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=84861784814&partnerID=8YFLogxK
U2 - 10.1016/j.sbi.2012.01.011
DO - 10.1016/j.sbi.2012.01.011
M3 - Review article
C2 - 22402497
AN - SCOPUS:84861784814
SN - 0959-440X
VL - 22
SP - 175
EP - 186
JO - Current Opinion in Structural Biology
JF - Current Opinion in Structural Biology
IS - 2
ER -