TY - JOUR
T1 - Concerted Mechanism of Water Insertion and O2 Release during the S4 to S0 Transition of the Oxygen-Evolving Complex in Photosystem II
AU - Shoji, Mitsuo
AU - Isobe, Hiroshi
AU - Shigeta, Yasuteru
AU - Nakajima, Takahito
AU - Yamaguchi, Kizashi
N1 - Funding Information:
This research was supported by JSPS KAKENHI grant numbers JP24000018, JP16KT0055, JP17H04866, and JP18H05154. Numerical calculations have been carried out under the supports of (1) HPCI system research project (project ID: hp160169) using the computational resource of the center for computational sciences (CCS), University of Tsukuba, (2) “Interdisciplinary Computational Science Program” at CCS, (3) the research center for computational Sciences, Okazaki, Japan, and (4) HPCI system research projects (project ID: hp150128 and hp160170) using the computational resources of the K computer provided by the RIKEN Advanced Institute for Computational Science (AICS).
Publisher Copyright:
Copyright © 2018 American Chemical Society.
PY - 2018/6/28
Y1 - 2018/6/28
N2 - The O2 release of the oxygen-evolving complex of the photosystem II (PSII) is one of the essential processes responsible for the highly efficient O2 production. Despite its importance, the detailed molecular mechanism is still unsolved. In the present study, we show that the O2 release is directly coupled with water insertion into the Mn cluster based on the quantum mechanics/molecular mechanics (QM/MM) calculations. In this mechanism, the O2 molecule first dissociates from the Mn sites in order, that is, the O atom coordinating to the Mn3 (O5a) first dissociates, then the other O atom coordinating to the Mn1 (O5d) dissociates in the next step in the late S4 state (1 → 2). Next, the O2 migrates to a space surrounded by the Val185 and His332 side chains as one water molecule coordinating to the Ca2+ ion (W3) comes into the O2 bonded site (2 → 3). Finally, a pre-S0 state (4) is formed after a proton transfer from the inserted water to the other proton acceptor site (W2) (3 → 4). The highest activation barrier during these reactions was found at the O2 release step (2 → 3) that only requires E† = 12.7 kcal mol-1 (G† = 10.4 kcal mol-1). A series of the reactions (2 → 3) look like a chain crash of billiard balls because the W3 is inserted into the catalytic center from the water-abundant side (Ca2+ ion side), and then the O2 moiety is pushed out to the opposite side (Val185 side). The hydrophobic residue of Val185 covers the active O5 site and forms an O2-specific permeation tunnel. The present sequential reactions clearly demonstrate the efficient removal of the toxic O2 from the catalytic center and implications of the essential roles of Val185, Ca2+ ions and water molecules, which are all present in the active site of PSII as the indispensable constituents.
AB - The O2 release of the oxygen-evolving complex of the photosystem II (PSII) is one of the essential processes responsible for the highly efficient O2 production. Despite its importance, the detailed molecular mechanism is still unsolved. In the present study, we show that the O2 release is directly coupled with water insertion into the Mn cluster based on the quantum mechanics/molecular mechanics (QM/MM) calculations. In this mechanism, the O2 molecule first dissociates from the Mn sites in order, that is, the O atom coordinating to the Mn3 (O5a) first dissociates, then the other O atom coordinating to the Mn1 (O5d) dissociates in the next step in the late S4 state (1 → 2). Next, the O2 migrates to a space surrounded by the Val185 and His332 side chains as one water molecule coordinating to the Ca2+ ion (W3) comes into the O2 bonded site (2 → 3). Finally, a pre-S0 state (4) is formed after a proton transfer from the inserted water to the other proton acceptor site (W2) (3 → 4). The highest activation barrier during these reactions was found at the O2 release step (2 → 3) that only requires E† = 12.7 kcal mol-1 (G† = 10.4 kcal mol-1). A series of the reactions (2 → 3) look like a chain crash of billiard balls because the W3 is inserted into the catalytic center from the water-abundant side (Ca2+ ion side), and then the O2 moiety is pushed out to the opposite side (Val185 side). The hydrophobic residue of Val185 covers the active O5 site and forms an O2-specific permeation tunnel. The present sequential reactions clearly demonstrate the efficient removal of the toxic O2 from the catalytic center and implications of the essential roles of Val185, Ca2+ ions and water molecules, which are all present in the active site of PSII as the indispensable constituents.
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U2 - 10.1021/acs.jpcb.8b03465
DO - 10.1021/acs.jpcb.8b03465
M3 - Article
C2 - 29852735
AN - SCOPUS:85048049691
SN - 1520-6106
VL - 122
SP - 6491
EP - 6502
JO - Journal of Physical Chemistry B
JF - Journal of Physical Chemistry B
IS - 25
ER -