TY - JOUR
T1 - Network of anatomical texts (NAnaTex), an open-source project for visualizing the interaction between anatomical terms
AU - Momota, Ryusuke
AU - Ohtsuka, Aiji
N1 - Funding Information:
We are grateful to Professor Thomas R. Gest (Texas Tech University Health Sciences Center, Paul L. Foster School of Medicine) for allowing us to use the tables in our project. This work was supported by the Okayama Medical Foundation.
Publisher Copyright:
© 2017, Japanese Association of Anatomists.
PY - 2018/1/1
Y1 - 2018/1/1
N2 - Anatomy is the science and art of understanding the structure of the body and its components in relation to the functions of the whole-body system. Medicine is based on a deep understanding of anatomy, but quite a few introductory-level learners are overwhelmed by the sheer amount of anatomical terminology that must be understood, so they regard anatomy as a dull and dense subject. To help them learn anatomical terms in a more contextual way, we started a new open-source project, the Network of Anatomical Texts (NAnaTex), which visualizes relationships of body components by integrating text-based anatomical information using Cytoscape, a network visualization software platform. Here, we present a network of bones and muscles produced from literature descriptions. As this network is primarily text-based and does not require any programming knowledge, it is easy to implement new functions or provide extra information by making changes to the original text files. To facilitate collaborations, we deposited the source code files for the network into the GitHub repository (https://github.com/ryusukemomota/nanatex) so that anybody can participate in the evolution of the network and use it for their own non-profit purposes. This project should help not only introductory-level learners but also professional medical practitioners, who could use it as a quick reference.
AB - Anatomy is the science and art of understanding the structure of the body and its components in relation to the functions of the whole-body system. Medicine is based on a deep understanding of anatomy, but quite a few introductory-level learners are overwhelmed by the sheer amount of anatomical terminology that must be understood, so they regard anatomy as a dull and dense subject. To help them learn anatomical terms in a more contextual way, we started a new open-source project, the Network of Anatomical Texts (NAnaTex), which visualizes relationships of body components by integrating text-based anatomical information using Cytoscape, a network visualization software platform. Here, we present a network of bones and muscles produced from literature descriptions. As this network is primarily text-based and does not require any programming knowledge, it is easy to implement new functions or provide extra information by making changes to the original text files. To facilitate collaborations, we deposited the source code files for the network into the GitHub repository (https://github.com/ryusukemomota/nanatex) so that anybody can participate in the evolution of the network and use it for their own non-profit purposes. This project should help not only introductory-level learners but also professional medical practitioners, who could use it as a quick reference.
KW - Anatomical terms
KW - Cytoscape
KW - GitHub
KW - Network analysis
KW - Open source
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U2 - 10.1007/s12565-017-0410-1
DO - 10.1007/s12565-017-0410-1
M3 - Article
C2 - 28741222
AN - SCOPUS:85025607146
SN - 1447-6959
VL - 93
SP - 149
EP - 153
JO - Anatomical Science International
JF - Anatomical Science International
IS - 1
ER -