TY - JOUR
T1 - Relative stability among intermediate structures in S2 state of CaMn4O5 cluster in PSII by using hybrid-DFT and DLPNO-CC methods and evaluation of magnetic interactions between Mn ions
AU - Miyagawa, K.
AU - Kawakami, T.
AU - Suzuki, Y.
AU - Isobe, H.
AU - Shoji, M.
AU - Yamanaka, S.
AU - Okumura, M.
AU - Nakajima, T.
AU - Yamaguchi, K.
N1 - Funding Information:
This work has been supported by a Grants-in-Aid for scientific research Nos. 17H06433 (KY) and 20K05528 (TK) by the Ministry of Education, Culture, Sports, Science and Technology (MEXT) of Japan . This research was also supported by the FOCUS Establishing Supercomputing Center of Excellence . The computations were performed using Research Centre for Computational Science, Okazaki, Japan.
Publisher Copyright:
© 2020 Elsevier B.V.
PY - 2021/1/15
Y1 - 2021/1/15
N2 - Full geometry optimization of all S2 intermediates in OEC (oxygen-evolving complex) of PSII (photosystem II) were carried out by using UB3LYP-D3/Def2-TZVP with COSMO solvation effects. Our detail calculations yielded meta-stable structures of six (=3 × 2 (HS (high-spin), IS (intermediate-spin)) intermediates for W1 = W2 = H2O and eight (=4 × 2 (HS, IS)) intermediates for W1 = OH− or W2 = OH−, and were named to H2O and OH models, respectively. In the next step, relative stability among these intermediate structures were investigated by hybrid-DFT and DLPNO-CC methods. UB3LYP methods show that right (R)-opened structures (open-cubane) are more stable than left (L)-opened structures (closed-cubane) by about 3.5 kcal/mol, though decreasing of DFT-weights suppresses such energy gaps. DLPNO-CCSD(T0) methods promote stabilization of (L)-structures and finally reproduce near degeneration or more stable (L)-structure. All pattern of spin configurations in four Mn(III) and Mn(IV) ions were assumed and BS (broken-symmetry) solutions were successfully obtained to find the most stable spin structures. This complete sets of all spin conformations enabled us evaluate sets of effective exchange integrals J as magnetic coupling parameters. The calculated J values for the spin Hamiltonian elucidated one g2 (S = 1/2) and two g4 (S = 5/2) molecular structures in the S2 state in accord with the recent EXAFS results.
AB - Full geometry optimization of all S2 intermediates in OEC (oxygen-evolving complex) of PSII (photosystem II) were carried out by using UB3LYP-D3/Def2-TZVP with COSMO solvation effects. Our detail calculations yielded meta-stable structures of six (=3 × 2 (HS (high-spin), IS (intermediate-spin)) intermediates for W1 = W2 = H2O and eight (=4 × 2 (HS, IS)) intermediates for W1 = OH− or W2 = OH−, and were named to H2O and OH models, respectively. In the next step, relative stability among these intermediate structures were investigated by hybrid-DFT and DLPNO-CC methods. UB3LYP methods show that right (R)-opened structures (open-cubane) are more stable than left (L)-opened structures (closed-cubane) by about 3.5 kcal/mol, though decreasing of DFT-weights suppresses such energy gaps. DLPNO-CCSD(T0) methods promote stabilization of (L)-structures and finally reproduce near degeneration or more stable (L)-structure. All pattern of spin configurations in four Mn(III) and Mn(IV) ions were assumed and BS (broken-symmetry) solutions were successfully obtained to find the most stable spin structures. This complete sets of all spin conformations enabled us evaluate sets of effective exchange integrals J as magnetic coupling parameters. The calculated J values for the spin Hamiltonian elucidated one g2 (S = 1/2) and two g4 (S = 5/2) molecular structures in the S2 state in accord with the recent EXAFS results.
KW - CaMnO cluster
KW - DLPNO-CC method
KW - Effective exchange integrals
KW - Hybrid DFT method
KW - OEC PSII
KW - One g2 two g4 model
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U2 - 10.1016/j.jphotochem.2020.112923
DO - 10.1016/j.jphotochem.2020.112923
M3 - Article
AN - SCOPUS:85091662891
SN - 1010-6030
VL - 405
JO - Journal of Photochemistry and Photobiology A: Chemistry
JF - Journal of Photochemistry and Photobiology A: Chemistry
M1 - 112923
ER -