TY - JOUR
T1 - Transcriptome analysis of thermogenic Arum concinnatum reveals the molecular components of floral scent production
AU - Onda, Yoshihiko
AU - Mochida, Keiichi
AU - Yoshida, Takuhiro
AU - Sakurai, Tetsuya
AU - Seymour, Roger S.
AU - Umekawa, Yui
AU - Pirintsos, Stergios Arg
AU - Shinozaki, Kazuo
AU - Ito, Kikukatsu
N1 - Funding Information:
The authors thank Tadamasa Sasaki and Yukiko Uehara-Yamaguchi of RIKEN Center for Sustainable Resource Science, for their valuable suggestions and comments on the manuscript. This work was supported by the Australian Research Council (Discovery Project DP0771854), the Japanese Society for the Promotion of Science (Grant No. 24380182), and the Alexander von Humboldt Foundation to R.S.S. This work was partially supported by a Grant-in-Aid for Scientific Research (B) (Grant No. 22380184) from the Japan Society for the Promotion of Science to K.I. This work was also supported by RIKEN incentive research project in fiscal year 2013 to K.M.
PY - 2015
Y1 - 2015
N2 - Several plant species can generate enough heat to increase their internal floral temperature above ambient temperature. Among thermogenic plants, Arum concinnatum shows the highest respiration activity during thermogenesis. However, an overall understanding of the genes related to plant thermogenesis has not yet been achieved. In this study, we performed de novo transcriptome analysis of flower organs in A. concinnatum. The de novo transcriptome assembly represented, in total, 158,490 non-redundant transcripts, and 53,315 of those showed significant homology with known genes. To explore genes associated with thermogenesis, we filtered 1266 transcripts that showed a significant correlation between expression pattern and the temperature trend of each sample. We confirmed five putative alternative oxidase transcripts were included in filtered transcripts as expected. An enrichment analysis of the Gene Ontology terms for the filtered transcripts suggested over-representation of genes involved in 1-deoxy-d-xylulose-5-phosphate synthase (DXS) activity. The expression profiles of DXS transcripts in the methyl-d-erythritol 4-phosphate (MEP) pathway were significantly correlated with thermogenic levels. Our results suggest that the MEP pathway is the main biosynthesis route for producing scent monoterpenes. To our knowledge, this is the first report describing the candidate pathway and the key enzyme for floral scent production in thermogenic plants.
AB - Several plant species can generate enough heat to increase their internal floral temperature above ambient temperature. Among thermogenic plants, Arum concinnatum shows the highest respiration activity during thermogenesis. However, an overall understanding of the genes related to plant thermogenesis has not yet been achieved. In this study, we performed de novo transcriptome analysis of flower organs in A. concinnatum. The de novo transcriptome assembly represented, in total, 158,490 non-redundant transcripts, and 53,315 of those showed significant homology with known genes. To explore genes associated with thermogenesis, we filtered 1266 transcripts that showed a significant correlation between expression pattern and the temperature trend of each sample. We confirmed five putative alternative oxidase transcripts were included in filtered transcripts as expected. An enrichment analysis of the Gene Ontology terms for the filtered transcripts suggested over-representation of genes involved in 1-deoxy-d-xylulose-5-phosphate synthase (DXS) activity. The expression profiles of DXS transcripts in the methyl-d-erythritol 4-phosphate (MEP) pathway were significantly correlated with thermogenic levels. Our results suggest that the MEP pathway is the main biosynthesis route for producing scent monoterpenes. To our knowledge, this is the first report describing the candidate pathway and the key enzyme for floral scent production in thermogenic plants.
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U2 - 10.1038/srep08753
DO - 10.1038/srep08753
M3 - Article
C2 - 25736477
AN - SCOPUS:84924240450
SN - 2045-2322
VL - 5
JO - Scientific reports
JF - Scientific reports
M1 - 8753
ER -